I’m a molecular biologist turned bioinformatician and AI engineer based in Cambridge, UK. I build tools and pipelines for functional genomics and AI-assisted research.
My work sits at the intersection of computational biology, research software, and practical AI. I’m particularly interested in building reproducible workflows, natural language interfaces to data, literature analysis tools, and software that helps researchers extract useful insight from biological datasets.
- 🧬 Research Focus: Understanding biological traits and genome evolution through molecular and computational approaches.
- 🌱 Interests: Fungal genomics, plant genomics, bioinformatics pipelines, practical AI.
- 💻 Tech Stack: Python, Nextflow, Bash, React.
- PolySNiP-nf - Nextflow pipeline for polyploid CRISPR amplicon genotyping
- snp-tree-nf - Variant calling and phylogenetic analysis pipeline for Illumina paired-end reads
- research_gaps - Analyse collections of academic papers to identify research gaps and propose follow-up studies.
- nano-assembler-nf - A Nextflow pipeline to assemble Oxford Nanopore long WGS reads, and perform QC and variant calling.
- YAAPi-nf - A yeast assembly and annotation pipeline for use with Illumina PE reads.
Molecular biologist turned bioinformatician and AI engineer