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Pull requests: nf-core/modules

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Pull requests list

Fix 103 dead documentation links in module meta.yml
#12581 opened Aug 4, 2026 by karpovantonme Loading…
3 tasks done
Update to topic pindel
#12580 opened Aug 4, 2026 by LouisLeNezet Contributor Loading…
17 tasks
1
@LouisLeNezet
Update to topic picrust2
#12579 opened Aug 4, 2026 by LouisLeNezet Contributor Loading…
17 tasks
1
@LouisLeNezet
Sort outputs in rclone modules
#12578 opened Aug 4, 2026 by atrigila Contributor Loading…
Update to topic phyloflash
#12577 opened Aug 4, 2026 by LouisLeNezet Contributor Loading…
17 tasks
1
@LouisLeNezet
Update to topic phispy
#12576 opened Aug 4, 2026 by LouisLeNezet Contributor Loading…
17 tasks
1
@LouisLeNezet
Update to topic pharokka
#12575 opened Aug 4, 2026 by LouisLeNezet Contributor Loading…
17 tasks
2
@LouisLeNezet
Add subworkflow for gridss somatic structural variant calling
#12574 opened Aug 4, 2026 by imsarath Contributor Loading…
17 tasks
1
@imsarath
Pcangsd inbreeding
#12531 opened Aug 3, 2026 by ASendellPrice Contributor • Draft
12 of 14 tasks
1
@ASendellPrice
1
chore: bump bwa-mem3 to 0.8.0
#12514 opened Aug 3, 2026 by emmcauley Contributor Loading…
17 tasks
Swap repeatmodeler to topics conda-fail size/m
#12513 opened Aug 3, 2026 by SPPearce Contributor • Draft
17 tasks
2
Swap repeatmasker to topics conda-fail size/m
#12506 opened Aug 3, 2026 by SPPearce Contributor • Draft
2
Decouple orf_class from ORF length across the custom/orf* modules
#12498 opened Aug 3, 2026 by FelixKrueger Contributor Loading…
8
updated module: xengsort/index Ready for Review
#12494 opened Aug 2, 2026 by LeonHornich Contributor Loading…
10 of 13 tasks
4
remove setting of bowtie2_index to an empty channel
#12490 opened Aug 1, 2026 by emmanuel-tan Loading…
19 tasks done
1
Update nvcr.io/nvidia/tensorflow Docker tag to v20.12 size/xs
#12488 opened Aug 1, 2026 by renovate Bot Loading…
2 tasks
Update dependency prettier to v3.9.6 size/xs
#12487 opened Aug 1, 2026 by renovate Bot Loading…
2 tasks
Migrate amulety to topics gpu module uses GPU help wanted Extra attention is needed
#12481 opened Jul 31, 2026 by atrigila Contributor • Draft Adopt topic channels in all nf-core modules
Migrate universc versions topic container-issue Ready for Review
#12479 opened Jul 31, 2026 by atrigila Contributor Loading… Adopt topic channels in all nf-core modules
Deep mased imp modules
#12472 opened Jul 31, 2026 by SkyLexS Contributor Loading…
10 of 17 tasks
@dialvarezs
3
canvas/germline: Added tests and missing inputs, some cleanup
#12462 opened Jul 29, 2026 by Schmytzi Contributor • Draft
9 of 17 tasks
Update module mobster
#12460 opened Jul 29, 2026 by valerianilucrezia Contributor Loading…
11 of 17 tasks
docs(orfnormalise): correct the GTF contract for rpbp and price Ready for Review
#12453 opened Jul 28, 2026 by pinin4fjords Member Loading…
3
Update bcftools/consensus/main.nf
#12449 opened Jul 28, 2026 by unholyparrot Loading…
17 tasks
1
Migrate narfmap/hashtable to topic channels
#12445 opened Jul 27, 2026 by xHaMMaDy Contributor Loading…
13 tasks done
1
14
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