Team MacLean Bioinformatics
- 12 followers
- United Kingdom
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Repositories
- proThrow Public
- komondor-api Public
- software_projects Public
Lists of repos that are software projects, R packages, and generally tools rather than analysis results
- metrics-petri Public Forked from rotsl/metrics-petri
Python package repository for quantifying Magnaporthe oryzae colony growth, morphology, cracking, and texture from time-series Petri-dish images.
- Automator Public Forked from rotsl/Automator
Research automation system for imaging microbial plates [Magnaporthe Orzae]
- RR_BINF_2101_fungal_coverage_in_petri_dishes Public Forked from rotsl/petrimodel
This repository trains and evaluates an area-consistency small U-Net for Petri image segmentation, then supports manual diameter validation against model-generated masks. It includes training data, LabelMe JSON annotations, trained checkpoints, sweep plots, and a PySide6 desktop tool for reviewing diameter measurements.
- SynBioShop Public
- gbeta Public
- alphafast Public Forked from RomeroLab/alphafast
AlphaFast: ultra-high-throughput AlphaFold3 inference with MMSeqs2-GPU
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